I am ran jts_upgrade which was a success.

Running ccm_upgrade I am at the point where you already checked the jts teamserver.properties file and you are looking at the ccm properties

file.and I am seeing some strangeness in my CCM teamserver.properties file.

Specifically the 

com.ibm.team.repository.setup.completed.setup=true

com.ibm.team.repository.server.webapp.url=https\://sandbox\:9445/ccm

com.ibm.team.datawarehouse.db.automatic.setup=true

com.ibm.team.datawarehouse.REPOSITORY_REMOTE_SNAPSHOT.remoteSnapshot.password=[DaReZo8tiPapgA7y3+pcHA\=\=]

com.ibm.team.repository.db.vendor=SQLSERVER

com.ibm.team.workitem.notification.approval.reminder.runAsUser=_rational

com.ibm.team.jfs.index.root.directory=C\:/RTCv4.0.5/JazzTeamServer/conf/ccm/indices

com.ibm.team.datawarehouse.ScmSnapshotTask.runAsUser=_rational

com.ibm.team.datawarehouse.RepositorySnapshotTask.runAsUser=_rational

com.ibm.team.repository.ws.allow.admin.access=false

com.ibm.team.datawarehouse.APT_REMOTE_SNAPSHOT.remoteSnapshot.password=[DaReZo8tiPapgA7y3+pcHA\=\=]

com.ibm.team.repository.setup.registration.pendingJtsFriend=<rdf\:RDF\r\n    xmlns\:rdf\="http\://www.w3.org/1999/02/22-rdf-syntax-ns\#"\r\n    xmlns\:j.0\="http\://purl.org/dc/terms/"\r\n    xmlns\:j.1\="http\://jazz.net/xmlns/prod/jazz/discovery/1.0/"\r\n    xmlns\:j.2\="http\://jazz.net/xmlns/prod/jazz/jfs/1.0/" > \r\n  <rdf\:Description rdf\:nodeID\="A0">\r\n    <j.2\:oauthDomain>https\://dc-rational1.ulinedm.com\:9445/jts</j.2\:oauthDomain>\r\n    <j.2\:internal>false</j.2\:internal>\r\n    <j.2\:trustedConsumer>true</j.2\:trustedConsumer>\r\n    <j.2\:id>9101d0f3-74ff-4dfe-bf54-7b1bd13f5532</j.2\:id>\r\n    <j.2\:oauthConsumerSecret>scmR123upd</j.2\:oauthConsumerSecret>\r\n    <j.2\:oauthConsumerKey>ac9419fead0d4ce6aac0ced581cfa227</j.2\:oauthConsumerKey>\r\n    <j.1\:rootServices rdf\:resource\="https\://dc-rational1.ulinedm.com\:9445/jts/rootservices"/>\r\n    <j.0\:title>Jazz Team Server</j.0\:title>\r\n    <rdf\:type rdf\:resource\="http\://jazz.net/xmlns/prod/jazz/discovery/1.0/Friend"/>\r\n  </rdf\:Description>\r\n</rdf\:RDF>\r\n

com.ibm.team.repository.setup.registration.pendingOauthConsumer=<rdf\:RDF\r\n    xmlns\:rdf\="http\://www.w3.org/1999/02/22-rdf-syntax-ns\#"\r\n    xmlns\:j.0\="http\://jazz.net/xmlns/foundation/1.0/" > \r\n  <rdf\:Description rdf\:nodeID\="A0">\r\n    <j.0\:oauthConsumerPreAuthId>jts_user</j.0\:oauthConsumerPreAuthId>\r\n    <j.0\:oauthConsumerName>Jazz Team Server</j.0\:oauthConsumerName>\r\n    <j.0\:oauthConsumerTrusted>true</j.0\:oauthConsumerTrusted>\r\n    <j.0\:oauthConsumerSecret>_dv8LELcyEeKv6OOqDddtKg</j.0\:oauthConsumerSecret>\r\n    <j.0\:oauthConsumerKey>29adc46ce3a84ddf99b372b4fb727997</j.0\:oauthConsumerKey>\r\n    <rdf\:type rdf\:resource\="http\://jazz.net/xmlns/foundation/1.0/OauthConsumer"/>\r\n  </rdf\:Description>\r\n</rdf\:RDF>\r\n

com.ibm.team.repository.caseInsensitiveUserIds=true

com.ibm.team.datawarehouse.BuildSnapshotTask.runAsUser=_rational

com.ibm.team.datawarehouse.db.vendor=sqlserver

com.ibm.team.datawarehouse.db.base.folder=E\:\\SQLData

com.ibm.team.datawarehouse.datawarehouse.provider=Remote

It appears that the entries in the ccm properties file appears to be that the server has not been finaized yet.

The server has not been touched in a year. 

So what should I do with those?

What about all of the "SNAPSHOT" ones as well?