eclipse code annotations

Any integration with code annotations like FIXME , TODO and work
items,

any way to import those as workitems?

You can currently create work items from the Error log and console, but
not yet from the Tasks view. I have created
https://jazz.net/jazz/resource/itemName/com.ibm.team.workitem.WorkItem/59387
for this.

any way to bind code annotations with work items to specify the right
lines in the files?

Work item references in code are detected: When you type e.g. 'work item
15' somewhere in a code comment, Ctrl+Click will open the corresponding
work item.

Java elements can also be referenced from a work item. You can e.g. DnD
a Java element into the work item description or a comment, and there is
automatic link detection for stack traces.

Patrick,
Jazz Work Item Team