How to get a cert presented to the license server for jts

We are currently using WebSphere Application server.  It hosts DOORSNG.    We are set up to use DoD CAC which was working fine.   However, new security measures have been implemented and now I can get to the jts site, however, I get an error saying that it cannot connect to the license server.  It looks like the CAC/Certificate information is used to connect to JTS, but when JTS tries to connect to the license server, the CAC/Cert information isn't being passed.  Does anyone know how we can pass the certificate information through to jts and to the Requirements application?