Ports

Which ports do you mean, those for RQM itself, or those for connecting up to other products?

For RQM, I found these listed under the section on Integrating with AppScan:
b. Server HTTP Port: Enter the HTTP Port for the server where Rational Quality Manager is located. The default port for Quality Manager is Port 9080.
c. Server HTTPS Port: Enter the HTTPS Port for the server where Rational Quality Manager is located. The default port for Quality Manager is Port 9443.

There should also be a section under Server Admin, either in RQM or RTC doc, since RQM uses the same settings as the Jazz server.

This is a great overview of the various ports used by the components of a Jazz deployment:
https://jazz.net/help/rational-team-concert/1.0.1/index.jsp?topic=/com.ibm.team.install.doc/topics/c_installation_worksheet.html