unable to run the JTS Setup Wizard after WAS configuration

Permission:

      patch.properties : Access denied (java.io.FilePermission patch.properties read)


Code:

     com.ibm.team.repository.server.servletbridge.JazzFrameworkLauncher  in  {file:/E:/Installation%20FilesWebSphere/AppServer/profiles/AppSrv01/installedApps/PC23Node01Cell/jts_war.ear/jts.war/WEB-INF/lib/jazzservletbridge.jar}



Stack Trace:

java.security.AccessControlException: Access denied (java.io.FilePermission patch.properties read)
    at java.security.AccessController.checkPermission(AccessController.java:132)
    at java.lang.SecurityManager.checkPermission(SecurityManager.java:544)
    at com.ibm.ws.security.core.SecurityManager.checkPermission(SecurityManager.java:208)
    at java.lang.SecurityManager.checkRead(SecurityManager.java:883)
    at java.io.File.exists(File.java:742)
    at com.ibm.team.repository.server.servletbridge.JazzFrameworkLauncher.isForceClean(JazzFrameworkLauncher.java:158)
    at com.ibm.team.repository.server.servletbridge.JazzFrameworkLauncher.deploy(JazzFrameworkLauncher.java:64)
    at org.eclipse.equinox.servletbridge.BridgeServlet.init(BridgeServlet.java:64)
    at javax.servlet.GenericServlet.init(GenericServlet.java:161)
    at com.ibm.team.repository.server.servletbridge.JazzServlet.init(JazzServlet.java:50)
    at com.ibm.ws.webcontainer.servlet.ServletWrapper.init(ServletWrapper.java:338)
    at com.ibm.ws.webcontainer.servlet.ServletWrapperImpl.init(ServletWrapperImpl.java:168)
    at com.ibm.ws.webcontainer.servlet.ServletWrapper.handleRequest(ServletWrapper.java:631)
    at com.ibm.ws.webcontainer.servlet.ServletWrapper.handleRequest(ServletWrapper.java:458)
    at com.ibm.ws.webcontainer.servlet.ServletWrapperImpl.handleRequest(ServletWrapperImpl.java:178)
    at com.ibm.ws.webcontainer.filter.WebAppFilterChain.invokeTarget(WebAppFilterChain.java:136)
    at com.ibm.ws.webcontainer.filter.WebAppFilterChain.doFilter(WebAppFilterChain.java:97)
    at com.ibm.team.repository.server.servletbridge.BridgeFilter.processDelegate(BridgeFilter.java:165)
    at com.ibm.team.repository.server.servletbridge.BridgeFilter.doFilter(BridgeFilter.java:198)
    at com.ibm.ws.webcontainer.filter.FilterInstanceWrapper.doFilter(FilterInstanceWrapper.java:195)
    at com.ibm.ws.webcontainer.filter.WebAppFilterChain.doFilter(WebAppFilterChain.java:91)
    at com.ibm.ws.webcontainer.filter.WebAppFilterManager.doFilter(WebAppFilterManager.java:928)
    at com.ibm.ws.webcontainer.filter.WebAppFilterManager.invokeFilters(WebAppFilterManager.java:1025)
    at com.ibm.ws.webcontainer.servlet.CacheServletWrapper.handleRequest(CacheServletWrapper.java:87)
    at com.ibm.ws.webcontainer.WebContainer.handleRequest(WebContainer.java:909)
    at com.ibm.ws.webcontainer.WSWebContainer.handleRequest(WSWebContainer.java:1662)
    at com.ibm.ws.webcontainer.channel.WCChannelLink.ready(WCChannelLink.java:200)
    at com.ibm.ws.http.channel.inbound.impl.HttpInboundLink.handleDiscrimination(HttpInboundLink.java:459)
    at com.ibm.ws.http.channel.inbound.impl.HttpInboundLink.handleNewRequest(HttpInboundLink.java:526)
    at com.ibm.ws.http.channel.inbound.impl.HttpInboundLink.processRequest(HttpInboundLink.java:312)
    at com.ibm.ws.http.channel.inbound.impl.HttpInboundLink.ready(HttpInboundLink.java:283)
    at com.ibm.ws.ssl.channel.impl.SSLConnectionLink.determineNextChannel(SSLConnectionLink.java:1048)
    at com.ibm.ws.ssl.channel.impl.SSLConnectionLink.readyInboundPostHandshake(SSLConnectionLink.java:716)
    at com.ibm.ws.ssl.channel.impl.SSLConnectionLink$MyHandshakeCompletedCallback.complete(SSLConnectionLink.java:412)
    at com.ibm.ws.ssl.channel.impl.SSLUtils.handleHandshake(SSLUtils.java:1066)
    at com.ibm.ws.ssl.channel.impl.SSLHandshakeIOCallback.complete(SSLHandshakeIOCallback.java:87)
    at com.ibm.ws.tcp.channel.impl.AioReadCompletionListener.futureCompleted(AioReadCompletionListener.java:175)
    at com.ibm.io.async.AbstractAsyncFuture.invokeCallback(AbstractAsyncFuture.java:217)
    at com.ibm.io.async.AsyncChannelFuture.fireCompletionActions(AsyncChannelFuture.java:161)
    at com.ibm.io.async.AsyncFuture.completed(AsyncFuture.java:138)
    at com.ibm.io.async.ResultHandler.complete(ResultHandler.java:204)
    at com.ibm.io.async.ResultHandler.runEventProcessingLoop(ResultHandler.java:775)
    at com.ibm.io.async.ResultHandler$2.run(ResultHandler.java:905)
    at com.ibm.ws.util.ThreadPool$Worker.run(ThreadPool.java:1862)

Never, ever, ever, ever install in the default Program Files. What you see is the aftermath of that. when starting the server the first time it tries to extract files into folders and does not have permission to do so. The Program Files folder is specially protected and you even have to run a cmd "as Administrator" to be able to start a server there. So your system user does not have the corrrect permissions.

I don't know why this default is still in there. Probably a system property. Install in like C:/IBM/.......